PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_794E99FF5.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 341aa    MW: 36807.3 Da    PI: 7.0953
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_794E99FF5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.7e-31182240259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY+++Hnh+
  Traes_1BL_794E99FF5.1 182 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSDHNHP 240
                            699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-31174242IPR003657WRKY domain
PROSITE profilePS5081133.109176242IPR003657WRKY domain
SuperFamilySSF1182901.44E-26178242IPR003657WRKY domain
SMARTSM007749.4E-38181241IPR003657WRKY domain
PfamPF031066.1E-26183240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MCDLFWLSPG EQGDLSDVVR ASLHPPHQLP TPATDEEEEE YSSLLLEGGS GGGGLVVGHG  60
HGDEQLGMVT MMMGGNTRPP SSDHQVISML HSPTATTYTR PHPEPLAGML RRPDIERGGM  120
VVAPLPEIGD RLQHMSIVHH PRVPAAMKPR KSQSKKVVCI PAPTAAPGAS GRHSTSGEVV  180
PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE RSRTDPNMLV ITYTSDHNHP  240
WPTQRNALAG STRPSSSAAA TAKIAASSSS SLAAAAARNS SNTNVDVDCA RAHHQLKQES  300
DLDLFADMDA LNVFSSIDKI QENDSKHQLF DPFSSGFCDY I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-19168242477Probable WRKY transcription factor 4
2lex_A7e-19168242477Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0187272e-81AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence.
GenBankAP0149662e-81AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126182e-81CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankKC9546102e-81KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572136.11e-114PREDICTED: probable WRKY transcription factor 29
TrEMBLW5A3840.0W5A384_WHEAT; Uncharacterized protein
STRINGMLOC_71477.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-55WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]